---
title: "BioNLP Shared Task Workshop 2011 — accepted papers"
description: "BioNLP Shared Task Workshop 2011 — accepted papers: 3 papers in the Elamur Research library (Portland, Oregon, USA), with our…"
canonical: "https://research.elamur.ai/free/en/venues/bionlp-workshop-and-shared-task/2011/"
---
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# BioNLP Shared Task Workshop 2011 — accepted papers

BioNLP Shared Task Workshop 2011 is the 2011 edition of the BioNLP Shared Task Workshop, held in Portland, Oregon, USA, June 2011 (publisher: Association for Computational Linguistics). OpenAlex lists 28 papers of it; our library holds 3 with our summaries. Below: the most cited papers, every accepted paper, and ours with their topics, authors and institutions.

[**28** papers in the proceedings](#all) · [**3** works in our library](https://md.research.elamur.ai/free/en/venues/bionlp-workshop-and-shared-task/2011/#works) · [**348** citations of these works](https://md.research.elamur.ai/free/en/venues/bionlp-workshop-and-shared-task/2011/#works)**Portland, Oregon, USA** where it was held**June 2011** when

## All accepted papers (28)

The most cited first; 3 with our summary link to their page here, the others to the original.

1. **[A Pattern Approach for Biomedical Event Annotation ↗](https://aclanthology.org/W11-1822/)**Quang Le Minh, Son Nguyen Truong, Quoc Ho Bao
2. **[Adapting a General Semantic Interpretation Approach to Biological Event Extraction ↗](https://aclanthology.org/W11-1827/)**Halil Kilicoglu, Sabine Bergler
3. **[An Incremental Model for the Coreference Resolution Task of BioNLP 2011 ↗](https://aclanthology.org/W11-1823/)**Don Tuggener, Manfred Klenner, Gerold Schneider et al.
4. **[BioNLP 2011 Task Bacteria Biotope – The Alvis system ↗](https://aclanthology.org/W11-1815/)**Zorana Ratkovic, Wiktoria Golik, Pierre Warnier et al.
5. **[BioNLP Shared Task 2011 - Bacteria Biotope ↗](https://aclanthology.org/W11-1809/)**Robert Bossy, Julien Jourde, Philippe Bessières et al.
6. **[BioNLP Shared Task 2011 – Bacteria Gene Interactions and Renaming ↗](https://aclanthology.org/W11-1810/)**Julien Jourde, Alain-Pierre Manine, Philippe Veber et al.
7. **[BioNLP Shared Task 2011: Supporting Resources ↗](https://aclanthology.org/W11-1816/)**Pontus Stenetorp, Goran Topić, Sampo Pyysalo et al.
8. **[Biomedical Event Extraction from Abstracts and Full Papers using Search-based Structured Prediction ↗](https://aclanthology.org/W11-1805/)**Andreas Vlachos, Mark Craven
9. **[Complex Biological Event Extraction from Full Text using Signatures of Linguistic and Semantic Features ↗](https://aclanthology.org/W11-1818/)**Liam R. McGrath, Kelly Domico, Courtney D. Corley et al.
10. **[Detecting Entity Relations as a Supporting Task for Bio-Molecular Event Extraction ↗](https://aclanthology.org/W11-1821/)**Sofie Van Landeghem, Thomas Abeel, Bernard De Baets et al.
11. **[Double Layered Learning for Biological Event Extraction from Text ↗](https://aclanthology.org/W11-1824/)**Ehsan Emadzadeh, Azadeh Nikfarjam, Graciela Gonzalez
12. **[Event Extraction as Dependency Parsing for BioNLP 2011 ↗](https://aclanthology.org/W11-1806/)**David McClosky, Mihai Surdeanu, Christopher Manning
13. **[Extracting Bacteria Biotopes with Semi-supervised Named Entity Recognition and Coreference Resolution ↗](https://aclanthology.org/W11-1814/)**Nhung T. H. Nguyen, Yoshimasa Tsuruoka
14. **[Extracting Biological Events from Text Using Simple Syntactic Patterns ↗](https://aclanthology.org/W11-1820/)**Quoc-Chinh Bui, Peter M.A. Sloot
15. **[From Graphs to Events: A Subgraph Matching Approach for Information Extraction from Biomedical Text ↗](https://aclanthology.org/W11-1826/)**Haibin Liu, Ravikumar Komandur, Karin Verspoor
16. **[Generalizing Biomedical Event Extraction ↗](https://aclanthology.org/W11-1828/)**Jari Björne, Tapio Salakoski
17. **[MSR-NLP Entry in BioNLP Shared Task 2011 ↗](https://aclanthology.org/W11-1825/)**Chris Quirk, Pallavi Choudhury, Michael Gamon et al.
18. **[Model Combination for Event Extraction in BioNLP 2011 ↗](https://aclanthology.org/W11-1808/)**Sebastian Riedel, David McClosky, Mihai Surdeanu et al.
19. **[Overview of BioNLP 2011 Protein Coreference Shared Task](https://md.research.elamur.ai/free/en/papers/nguyen-2011-overview-bionlp-2011-protein-coreference/)**Ngan Nguyen, Jin-Dong Kim, Jun'ichi Tsujii*our summary*
20. **[Overview of BioNLP Shared Task 2011](https://md.research.elamur.ai/free/en/papers/kim-2011-overview-bionlp-shared-task-2011/)**Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta et al.*our summary*
21. **[Overview of Genia Event Task in BioNLP Shared Task 2011 ↗](https://aclanthology.org/W11-1802/)**Jin-Dong Kim, Yue Wang, Toshihisa Takagi et al.
22. **[Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011 ↗](https://aclanthology.org/W11-1812/)**Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
23. **[Overview of the Epigenetics and Post-translational Modifications (EPI) task of BioNLP Shared Task 2011 ↗](https://aclanthology.org/W11-1803/)**Tomoko Ohta, Sampo Pyysalo, Jun'ichi Tsujii
24. **[Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011 ↗](https://aclanthology.org/W11-1804/)**Sampo Pyysalo, Tomoko Ohta, Rafal Rak et al.
25. **[Robust Biomedical Event Extraction with Dual Decomposition and Minimal Domain Adaptation ↗](https://aclanthology.org/W11-1807/)**Sebastian Riedel, Andrew McCallum

[See all 28 papers in BioNLP Shared Task Workshop 2011 — accepted papers →](https://md.research.elamur.ai/free/en/venues/bionlp-workshop-and-shared-task/2011/papers/)

## Papers with our summary in our library (3)

The most cited first (OpenAlex citations plus our library's).

1. **[Overview of BioNLP Shared Task 2011](https://md.research.elamur.ai/free/en/papers/kim-2011-overview-bionlp-shared-task-2011/) [BioNLP Shared Task Workshop](https://md.research.elamur.ai/free/en/venues/bionlp-workshop-and-shared-task/)**Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, et al.*2011 · 289 citations*
2. **[Overview of BioNLP 2011 Protein Coreference Shared Task](https://md.research.elamur.ai/free/en/papers/nguyen-2011-overview-bionlp-2011-protein-coreference/) [BioNLP Shared Task Workshop](https://md.research.elamur.ai/free/en/venues/bionlp-workshop-and-shared-task/)**Ngan Nguyen, Jin-Dong Kim, Jun'ichi Tsujii*2011 · 32 citations*
3. **[The Taming of Reconcile as a Biomedical Coreference Resolver](https://md.research.elamur.ai/free/en/papers/kim-2011-taming-reconcile-as-biomedical-coreference/) [BioNLP Shared Task Workshop](https://md.research.elamur.ai/free/en/venues/bionlp-workshop-and-shared-task/)**Youngjun Kim, Ellen Riloff, Nathan Gilbert*2011 · 27 citations*

## Top topics

Topics of its works in our library, with the number of works on each.

[Coreference resolution (2)](https://md.research.elamur.ai/free/en/topics/coreference-resolution/)

## Fields

[Biochemistry, Genetics and Molecular Biology (3)](https://md.research.elamur.ai/free/en/shelves/biochemistry-genetics-and-molecular-biology/) · [Arts and Humanities (2)](https://md.research.elamur.ai/free/en/shelves/arts-and-humanities/) · [Computer Science (2)](https://md.research.elamur.ai/free/en/shelves/computer-science/) · [Decision Sciences (1)](https://md.research.elamur.ai/free/en/shelves/decision-sciences/)

## Top authors

Authors with a page who published here most often: their works here, and the citations of those works.

[🧑‍🔬**Jin-Dong Kim**2 works here · 321 citations](https://md.research.elamur.ai/free/en/authors/jin-dong-kim/) · [🧑‍🔬**Jun'ichi Tsujii**2 works here · 321 citations](https://md.research.elamur.ai/free/en/authors/jun-ichi-tsujii/) · [🧑‍🔬**Ngan Nguyen**2 works here · 321 citations](https://md.research.elamur.ai/free/en/authors/ngan-nguyen/) · [🧑‍🔬**Robert Bossy**1 work here · 289 citations](https://md.research.elamur.ai/free/en/authors/robert-bossy/) · [🧑‍🔬**Sampo Pyysalo**1 work here · 289 citations](https://md.research.elamur.ai/free/en/authors/sampo-pyysalo/) · [🧑‍🔬**Tomoko Ohta**1 work here · 289 citations](https://md.research.elamur.ai/free/en/authors/tomoko-ohta/) · [🧑‍🔬**Ellen Riloff**1 work here · 27 citations](https://md.research.elamur.ai/free/en/authors/ellen-riloff/) · [🧑‍🔬**Nathan Gilbert**1 work here · 27 citations](https://md.research.elamur.ai/free/en/authors/nathan-gilbert/)

## Top institutions

Institutions on the bylines of its works here, by the number of works.

[🎓**The University of Tokyo** Tokyo · Japan 2 works here](https://md.research.elamur.ai/free/en/universities/the-university-of-tokyo/) · [🎓**University of Utah** Salt Lake City · United States 1 work here](https://md.research.elamur.ai/free/en/universities/university-of-utah/) · [🎓**University of Manchester** Manchester · United Kingdom 1 work here](https://md.research.elamur.ai/free/en/universities/university-of-manchester/) · [🏢**Microsoft Research Asia** Beijing · China 1 work here](https://md.research.elamur.ai/free/en/companies/microsoft-research-asia/)

Place and dates from the event's site or the ACL Anthology; works and citations from OpenAlex and our library.

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