---
title: "BioNLP Shared Task Workshop 2011 — all accepted papers"
description: "All 28 papers of BioNLP Shared Task Workshop 2011, the most cited first; those with our summary link to it."
canonical: "https://research.elamur.ai/free/en/venues/bionlp-workshop-and-shared-task/2011/papers/"
---
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# BioNLP Shared Task Workshop 2011: all accepted papers

28 papers · the most cited first · [← BioNLP Shared Task Workshop 2011](https://md.research.elamur.ai/free/en/venues/bionlp-workshop-and-shared-task/2011/)

1. **[A Pattern Approach for Biomedical Event Annotation ↗](https://aclanthology.org/W11-1822/)**Quang Le Minh, Son Nguyen Truong, Quoc Ho Bao
2. **[Adapting a General Semantic Interpretation Approach to Biological Event Extraction ↗](https://aclanthology.org/W11-1827/)**Halil Kilicoglu, Sabine Bergler
3. **[An Incremental Model for the Coreference Resolution Task of BioNLP 2011 ↗](https://aclanthology.org/W11-1823/)**Don Tuggener, Manfred Klenner, Gerold Schneider et al.
4. **[BioNLP 2011 Task Bacteria Biotope – The Alvis system ↗](https://aclanthology.org/W11-1815/)**Zorana Ratkovic, Wiktoria Golik, Pierre Warnier et al.
5. **[BioNLP Shared Task 2011 - Bacteria Biotope ↗](https://aclanthology.org/W11-1809/)**Robert Bossy, Julien Jourde, Philippe Bessières et al.
6. **[BioNLP Shared Task 2011 – Bacteria Gene Interactions and Renaming ↗](https://aclanthology.org/W11-1810/)**Julien Jourde, Alain-Pierre Manine, Philippe Veber et al.
7. **[BioNLP Shared Task 2011: Supporting Resources ↗](https://aclanthology.org/W11-1816/)**Pontus Stenetorp, Goran Topić, Sampo Pyysalo et al.
8. **[Biomedical Event Extraction from Abstracts and Full Papers using Search-based Structured Prediction ↗](https://aclanthology.org/W11-1805/)**Andreas Vlachos, Mark Craven
9. **[Complex Biological Event Extraction from Full Text using Signatures of Linguistic and Semantic Features ↗](https://aclanthology.org/W11-1818/)**Liam R. McGrath, Kelly Domico, Courtney D. Corley et al.
10. **[Detecting Entity Relations as a Supporting Task for Bio-Molecular Event Extraction ↗](https://aclanthology.org/W11-1821/)**Sofie Van Landeghem, Thomas Abeel, Bernard De Baets et al.
11. **[Double Layered Learning for Biological Event Extraction from Text ↗](https://aclanthology.org/W11-1824/)**Ehsan Emadzadeh, Azadeh Nikfarjam, Graciela Gonzalez
12. **[Event Extraction as Dependency Parsing for BioNLP 2011 ↗](https://aclanthology.org/W11-1806/)**David McClosky, Mihai Surdeanu, Christopher Manning
13. **[Extracting Bacteria Biotopes with Semi-supervised Named Entity Recognition and Coreference Resolution ↗](https://aclanthology.org/W11-1814/)**Nhung T. H. Nguyen, Yoshimasa Tsuruoka
14. **[Extracting Biological Events from Text Using Simple Syntactic Patterns ↗](https://aclanthology.org/W11-1820/)**Quoc-Chinh Bui, Peter M.A. Sloot
15. **[From Graphs to Events: A Subgraph Matching Approach for Information Extraction from Biomedical Text ↗](https://aclanthology.org/W11-1826/)**Haibin Liu, Ravikumar Komandur, Karin Verspoor
16. **[Generalizing Biomedical Event Extraction ↗](https://aclanthology.org/W11-1828/)**Jari Björne, Tapio Salakoski
17. **[MSR-NLP Entry in BioNLP Shared Task 2011 ↗](https://aclanthology.org/W11-1825/)**Chris Quirk, Pallavi Choudhury, Michael Gamon et al.
18. **[Model Combination for Event Extraction in BioNLP 2011 ↗](https://aclanthology.org/W11-1808/)**Sebastian Riedel, David McClosky, Mihai Surdeanu et al.
19. **[Overview of BioNLP 2011 Protein Coreference Shared Task](https://md.research.elamur.ai/free/en/papers/nguyen-2011-overview-bionlp-2011-protein-coreference/)**Ngan Nguyen, Jin-Dong Kim, Jun'ichi Tsujii*our summary*
20. **[Overview of BioNLP Shared Task 2011](https://md.research.elamur.ai/free/en/papers/kim-2011-overview-bionlp-shared-task-2011/)**Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta et al.*our summary*
21. **[Overview of Genia Event Task in BioNLP Shared Task 2011 ↗](https://aclanthology.org/W11-1802/)**Jin-Dong Kim, Yue Wang, Toshihisa Takagi et al.
22. **[Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011 ↗](https://aclanthology.org/W11-1812/)**Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
23. **[Overview of the Epigenetics and Post-translational Modifications (EPI) task of BioNLP Shared Task 2011 ↗](https://aclanthology.org/W11-1803/)**Tomoko Ohta, Sampo Pyysalo, Jun'ichi Tsujii
24. **[Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011 ↗](https://aclanthology.org/W11-1804/)**Sampo Pyysalo, Tomoko Ohta, Rafal Rak et al.
25. **[Robust Biomedical Event Extraction with Dual Decomposition and Minimal Domain Adaptation ↗](https://aclanthology.org/W11-1807/)**Sebastian Riedel, Andrew McCallum
26. **[Sentence Filtering for BioNLP: Searching for Renaming Acts ↗](https://aclanthology.org/W11-1817/)**Pierre Warnier, Claire Nédellec
27. **[The Taming of Reconcile as a Biomedical Coreference Resolver](https://md.research.elamur.ai/free/en/papers/kim-2011-taming-reconcile-as-biomedical-coreference/)**Youngjun Kim, Ellen Riloff, Nathan Gilbert*our summary*
28. **[Using Kybots for Extracting Events in Biomedical Texts ↗](https://aclanthology.org/W11-1819/)**Arantza Casillas, Arantza Díaz de Ilarraza, Koldo Gojenola et al.
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