--- title: "BioNLP 2009 — papers — Elamur Research" description: "BioNLP 2009 — papers: 2 papers in the Elamur Research library, with our summaries, ranked by citations." canonical: "https://research.elamur.ai/free/en/venues/bionlp/2009/" --- [Elamur Research](https://md.research.elamur.ai/free/en/) · [this page in HTML](https://research.elamur.ai/free/en/venues/bionlp/2009/) [home](https://md.research.elamur.ai/free/en/) / [venues](https://md.research.elamur.ai/free/en/venues/) / [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/) / 2009 # BioNLP 2009 — papers The works of BioNLP published in 2009 that our library holds (publisher: Association for Computational Linguistics): 2 works, listed below with the most cited first; each has a page with our summary, its key points and its references. [**25** works that year](#all) · [**2** works in our library](https://md.research.elamur.ai/free/en/venues/bionlp/2009/#works) · [**192** citations of these works](https://md.research.elamur.ai/free/en/venues/bionlp/2009/#works) ## All works of the year (25) The most cited first; 2 with our summary link to their page here, the others to the original. 1. **[Bridging the Gap between Domain-Oriented and Linguistically-Oriented Semantics ↗](https://aclanthology.org/W09-1321/)**Sumire Uematsu, Jin-Dong Kim, Jun'ichi Tsujii 2. **[Clustering Semantic Spaces of Suicide Notes and Newsgroups Articles. ↗](https://aclanthology.org/W09-1323/)**Pawel Matykiewicz, Wlodzislaw Duch, John Pestian 3. **[Disambiguation of Biomedical Abbreviations ↗](https://aclanthology.org/W09-1309/)**Mark Stevenson, Yikun Guo, Abdulaziz Alamri et al. 4. **[Distinguishing Historical from Current Problems in Clinical Reports – Which Textual Features Help? ↗](https://aclanthology.org/W09-1302/)**Danielle Mowery, Henk Harkema, John Dowling et al. 5. **[Evaluation of the Clinical Question Answering Presentation ↗](https://aclanthology.org/W09-1322/)**Yong-Gang Cao, John Ely, Lamont Antieau et al. 6. **[Exploring Graph Structure for Detection of Reliability Zones within Synonym Resources: Experiment with the Gene Ontology ↗](https://aclanthology.org/W09-1311/)**Thierry Hamon, Natalia Grabar 7. **[Exploring Two Biomedical Text Genres for Disease Recognition ↗](https://aclanthology.org/W09-1319/)**Aurélie Névéol, Won Kim, W. John Wilbur et al. 8. **[Extraction of Named Entities from Tables in Gene Mutation Literature ↗](https://aclanthology.org/W09-1306/)**Wern Wong, David Martinez, Lawrence Cavedon 9. **[How Feasible and Robust is the Automatic Extraction of Gene Regulation Events? A Cross-Method Evaluation under Lab and Real-Life Conditions ↗](https://aclanthology.org/W09-1305/)**Udo Hahn, Katrin Tomanek, Ekaterina Buyko et al. 10. **[Identifying Interaction Sentences from Biological Literature Using Automatically Extracted Patterns ↗](https://aclanthology.org/W09-1317/)**Haibin Liu, Christian Blouin, Vlado Kešelj 11. **[Incorporating GENETAG-style annotation to GENIA corpus ↗](https://aclanthology.org/W09-1313/)**Tomoko Ohta, Jin-Dong Kim, Sampo Pyysalo et al. 12. **[Incorporating Syntactic Dependency Information towards Improved Coding of Lengthy Medical Concepts in Clinical Reports ↗](https://aclanthology.org/W09-1316/)**Vijayaraghavan Bashyam, Ricky K Taira 13. **[Investigation of Unsupervised Pattern Learning Techniques for Bootstrap Construction of a Medical Treatment Lexicon ↗](https://aclanthology.org/W09-1308/)**Rong Xu, Alexander A. Morgan, Amar Das et al. 14. **[Learning the Scope of Hedge Cues in Biomedical Texts](https://md.research.elamur.ai/free/en/papers/morante-2009-learning-scope-hedge-cues-biomedical/)**Roser Morante, Walter Daelemans*our summary* 15. **[ONYX: A System for the Semantic Analysis of Clinical Text ↗](https://aclanthology.org/W09-1303/)**Lee Christensen, Henk Harkema, Peter Haug et al. 16. **[Selecting an Ontology for Biomedical Text Mining ↗](https://aclanthology.org/W09-1307/)**He Tan, Patrick Lambrix 17. **[Semantic Annotation of Papers: Interface & Enrichment Tool (SAPIENT) ↗](https://aclanthology.org/W09-1325/)**Maria Liakata, Claire Q, Larisa N. Soldatova 18. **[Static Relations: a Piece in the Biomedical Information Extraction Puzzle ↗](https://aclanthology.org/W09-1301/)**Sampo Pyysalo, Tomoko Ohta, Jin-Dong Kim et al. 19. **[TEXT2TABLE: Medical Text Summarization System Based on Named Entity Recognition and Modality Identification ↗](https://aclanthology.org/W09-1324/)**Eiji Aramaki, Yasuhide Miura, Masatsugu Tonoike et al. 20. **[TX Task: Automatic Detection of Focus Organisms in Biomedical Publications ↗](https://aclanthology.org/W09-1310/)**Thomas Kappeler, Kaarel Kaljurand, Fabio Rinaldi 21. **[Towards Automatic Generation of Gene Summary ↗](https://aclanthology.org/W09-1312/)**Feng Jin, Minlie Huang, Zhiyong Lu et al. 22. **[Towards Retrieving Relevant Information for Answering Clinical Comparison Questions ↗](https://aclanthology.org/W09-1320/)**Annette Leonhard 23. **[Transforming Controlled Natural Language Biomedical Queries into Answer Set Programs ↗](https://aclanthology.org/W09-1315/)**Esra Erdem, Reyyan Yeniterzi 24. **[User-Driven Development of Text Mining Resources for Cancer Risk Assessment ↗](https://aclanthology.org/W09-1314/)**Lin Sun, Anna Korhonen, Ilona Silins et al. 25. **[Using Hedges to Enhance a Disease Outbreak Report Text Mining System](https://md.research.elamur.ai/free/en/papers/conway-2009-hedges-enhance-disease-outbreak-report/)**Mike Conway, Son Doan, Nigel Collier*our summary* ## Works with our summary in our library (2) The most cited first (OpenAlex citations plus our library's). 1. **[Learning the Scope of Hedge Cues in Biomedical Texts](https://md.research.elamur.ai/free/en/papers/morante-2009-learning-scope-hedge-cues-biomedical/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Roser Morante, Walter Daelemans*2009 · 175 citations* 2. **[Using Hedges to Enhance a Disease Outbreak Report Text Mining System](https://md.research.elamur.ai/free/en/papers/conway-2009-hedges-enhance-disease-outbreak-report/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Mike Conway, Son Doan, Nigel Collier*2009 · 17 citations* ## Fields [Arts and Humanities (2)](https://md.research.elamur.ai/free/en/shelves/arts-and-humanities/) · [Biochemistry, Genetics and Molecular Biology (2)](https://md.research.elamur.ai/free/en/shelves/biochemistry-genetics-and-molecular-biology/) · [Computer Science (2)](https://md.research.elamur.ai/free/en/shelves/computer-science/) · [Medicine (1)](https://md.research.elamur.ai/free/en/shelves/medicine/) ## Top authors Authors with a page who published here most often: their works here, and the citations of those works. [🧑‍🔬**Roser Morante**1 work here · 175 citations](https://md.research.elamur.ai/free/en/authors/roser-morante/) · [🧑‍🔬**Walter Daelemans**1 work here · 175 citations](https://md.research.elamur.ai/free/en/authors/walter-daelemans/) · [🧑‍🔬**Mike Conway**1 work here · 17 citations](https://md.research.elamur.ai/free/en/authors/mike-conway/) · [🧑‍🔬**Nigel Collier**1 work here · 17 citations](https://md.research.elamur.ai/free/en/authors/nigel-collier/) ## Top institutions Institutions on the bylines of its works here, by the number of works. [🎓**University of Antwerp** Antwerp · Belgium 1 work here](https://md.research.elamur.ai/free/en/universities/university-of-antwerp/) · [🔬**National Institute of Informatics** Tokyo · Japan 1 work here](https://md.research.elamur.ai/free/en/labs/national-institute-of-informatics/) · [🏥**Vanderbilt University Medical Center** Nashville · United States 1 work here](https://md.research.elamur.ai/free/en/hospitals/vanderbilt-university-medical-center/) works and citations from OpenAlex and our library. - [next → BioNLP 2011](https://md.research.elamur.ai/free/en/venues/bionlp/2011/) - [↑ back to BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)