--- title: "BioNLP 2011 — papers — Elamur Research" description: "BioNLP 2011 — papers: 1 paper in the Elamur Research library, with our summaries, ranked by citations." canonical: "https://research.elamur.ai/free/en/venues/bionlp/2011/" --- [Elamur Research](https://md.research.elamur.ai/free/en/) · [this page in HTML](https://research.elamur.ai/free/en/venues/bionlp/2011/) [home](https://md.research.elamur.ai/free/en/) / [venues](https://md.research.elamur.ai/free/en/venues/) / [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/) / 2011 # BioNLP 2011 — papers The works of BioNLP published in 2011 that our library holds (publisher: Association for Computational Linguistics): 1 work, listed below with the most cited first; each has a page with our summary, its key points and its references. [**25** works that year](#all) · [**1** work in our library](https://md.research.elamur.ai/free/en/venues/bionlp/2011/#works) · [**6** citations of these works](https://md.research.elamur.ai/free/en/venues/bionlp/2011/#works) ## All works of the year (25) The most cited first; 1 with our summary link to their page here, the others to the original. 1. **[A Study on Dependency Tree Kernels for Automatic Extraction of Protein-Protein Interaction ↗](https://aclanthology.org/W11-0216/)**Faisal Md. Chowdhury, Alberto Lavelli, Alessandro Moschitti 2. **[Automatic Acquisition of Huge Training Data for Bio-Medical Named Entity Recognition ↗](https://aclanthology.org/W11-0208/)**Yu Usami, Han-Cheol Cho, Naoaki Okazaki et al. 3. **[Automatic extraction of data deposition statements: where do the research results go? ↗](https://aclanthology.org/W11-0213/)**Aurélie Névéol, W. John Wilbur, Zhiyong Lu 4. **[Building Timelines from Narrative Clinical Records: Initial Results Based-on Deep Natural Language Understanding ↗](https://aclanthology.org/W11-0219/)**Hyuckchul Jung, James Allen, Nate Blaylock et al. 5. **[Building a Coreference-Annotated Corpus from the Domain of Biochemistry](https://md.research.elamur.ai/free/en/papers/navarro-2011-building-coreference-annotated-corpus-domain/)**Riza Theresa Batista-Navarro, Sophia Ananiadou*our summary* 6. **[Building frame-based corpus on the basis of ontological domain knowledge ↗](https://aclanthology.org/W11-0209/)**He Tan, Rajaram Kaliyaperumal, Nirupama Benis 7. **[EVEX: A PubMed-Scale Resource for Homology-Based Generalization of Text Mining Predictions ↗](https://aclanthology.org/W11-0204/)**Sofie Van Landeghem, Filip Ginter, Yves Van de Peer et al. 8. **[Fast and simple semantic class assignment for biomedical text ↗](https://aclanthology.org/W11-0205/)**K. Bretonnel Cohen, Thomas Christiansen, William Baumgartner Jr. et al. 9. **[From Pathways to Biomolecular Events: Opportunities and Challenges ↗](https://aclanthology.org/W11-0214/)**Tomoko Ohta, Sampo Pyysalo, Jun'ichi Tsujii 10. **[Hypothesis and Evidence Extraction from Full-Text Scientific Journal Articles ↗](https://aclanthology.org/W11-0217/)**Elizabeth White, K. Bretonnel Cohen, Larry Hunter 11. **[In Search of Protein Locations ↗](https://aclanthology.org/W11-0212/)**Catherine Blake, Wu Zheng 12. **[Learning Phenotype Mapping for Integrating Large Genetic Data ↗](https://aclanthology.org/W11-0203/)**Chun-Nan Hsu, Cheng-Ju Kuo, Congxing Cai et al. 13. **[Medical Entity Recognition: A Comparaison of Semantic and Statistical Methods ↗](https://aclanthology.org/W11-0207/)**Asma Ben Abacha, Pierre Zweigenbaum 14. **[Medstract - The Next Generation ↗](https://aclanthology.org/W11-0224/)**Marc Verhagen, James Pustejovsky 15. **[Not all links are equal: Exploiting Dependency Types for the Extraction of Protein-Protein Interactions from Text ↗](https://aclanthology.org/W11-0201/)**Philippe Thomas, Stefan Pietschmann, Illés Solt et al. 16. **[Parsing Natural Language Queries for Life Science Knowledge ↗](https://aclanthology.org/W11-0221/)**Tadayoshi Hara, Yuka Tateisi, Jin-Dong Kim et al. 17. **[Self-training and co-training in biomedical word sense disambiguation ↗](https://aclanthology.org/W11-0223/)**Antonio Jimeno-Yepes, Alan Aronson 18. **[SimSem: Fast Approximate String Matching in Relation to Semantic Category Disambiguation ↗](https://aclanthology.org/W11-0218/)**Pontus Stenetorp, Sampo Pyysalo, Jun'ichi Tsujii 19. **[Text Mining Techniques for Leveraging Positively Labeled Data ↗](https://aclanthology.org/W11-0220/)**Lana Yeganova, Donald C. Comeau, Won Kim et al. 20. **[ThaiHerbMiner: A Thai Herbal Medicine Mining and Visualizing Tool ↗](https://aclanthology.org/W11-0225/)**Choochart Haruechaiyasak, Jaruwat Pailai, Wasna Viratyosin et al. 21. **[The Role of Information Extraction in the Design of a Document Triage Application for Biocuration ↗](https://aclanthology.org/W11-0206/)**Sandeep Pokkunuri, Cartic Ramakrishnan, Ellen Riloff et al. 22. **[Towards Exhaustive Event Extraction for Protein Modifications ↗](https://aclanthology.org/W11-0215/)**Sampo Pyysalo, Tomoko Ohta, Makoto Miwa et al. 23. **[Towards Morphologically Annotated Corpus of Hospital Discharge Reports in Polish ↗](https://aclanthology.org/W11-0211/)**Malgorzata Marciniak, Agnieszka Mykowiecka 24. **[Unlocking Medical Ontologies for Non-Ontology Experts ↗](https://aclanthology.org/W11-0222/)**Shao Fen Liang, Donia Scott, Robert Stevens et al. 25. **[Unsupervised Entailment Detection between Dependency Graph Fragments ↗](https://aclanthology.org/W11-0202/)**Marek Rei, Ted Briscoe ## Works with our summary in our library (1) The most cited first (OpenAlex citations plus our library's). 1. **[Building a Coreference-Annotated Corpus from the Domain of Biochemistry](https://md.research.elamur.ai/free/en/papers/navarro-2011-building-coreference-annotated-corpus-domain/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Riza Theresa Batista-Navarro, Sophia Ananiadou*2011 · 6 citations* ## Top topics Topics of its works in our library, with the number of works on each. [Coreference resolution (1)](https://md.research.elamur.ai/free/en/topics/coreference-resolution/) ## Fields [Arts and Humanities (1)](https://md.research.elamur.ai/free/en/shelves/arts-and-humanities/) ## Top authors Authors with a page who published here most often: their works here, and the citations of those works. [🧑‍🔬**Sophia Ananiadou**1 work here · 6 citations](https://md.research.elamur.ai/free/en/authors/sophia-ananiadou/) works and citations from OpenAlex and our library. - [← previous BioNLP 2009](https://md.research.elamur.ai/free/en/venues/bionlp/2009/) - [next → BioNLP 2026](https://md.research.elamur.ai/free/en/venues/bionlp/2026/) - [↑ back to BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)