---
title: "BioNLP 2026 — papers — Elamur Research"
description: "BioNLP 2026 — papers: 45 papers in the Elamur Research library, with our summaries, ranked by citations."
canonical: "https://research.elamur.ai/free/en/venues/bionlp/2026/"
---
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# BioNLP 2026 — papers

The works of BioNLP published in 2026 that our library holds (publisher: Association for Computational Linguistics): 45 works, listed below with the most cited first; each has a page with our summary, its key points and its references.

[**124** works that year](#all) · [**45** works in our library](https://md.research.elamur.ai/free/en/venues/bionlp/2026/works/) · [**28** citations of these works](https://md.research.elamur.ai/free/en/venues/bionlp/2026/works/)

## All works of the year (124)

The most cited first; 45 with our summary link to their page here, the others to the original.

1. **[Operation-Mechanism Alignment for Reliable Clinical Reasoning over Electronic Health Records](https://md.research.elamur.ai/free/en/papers/tao-2026-operation-mechanism-alignment-reliable-clinical/)**Guanyu Tao, Siyao Wang, Yong Xue et al.*1 citation · our summary*
2. **[PromptRad: Knowledge-Enhanced Multi-Label Prompt-Tuning for Low-Resource Radiology Report Labeling ↗](https://aclanthology.org/2026.bionlp-1.20/)**Ying-Jia Lin, Tzu-Chin Lo, Ping-Chien Li et al.*1 citation*
3. **[A Comparative Analysis of In-Context Learning and Fine-Tuning for Biomedical Information Retrieval and Sentence Extraction Using Research Domain Criteria ↗](https://aclanthology.org/2026.bionlp-1.51/)**Athlene Jones, Khanh Lieu, Indika Kahanda
4. **[A Deterministic Multi-Stage Retrieval Pipeline for Longitudinal EHR Question Answering ↗](https://aclanthology.org/2026.bionlp-1.53/)**Shubham Agarwal, Thomas Searle, Richard Dobson et al.
5. **[A Multi-Agent Open-Source LLM for Structured Cancer Registry Information Extraction from Pathology and Medical Reports ↗](https://aclanthology.org/2026.bionlp-1.43/)**Abdulrahman Aal Abdulsalam, Adhari Al Zaabi, Riham Jeeballah et al.
6. **[A Multi-View Framework for Cross-Domain Nutrition Misinformation Detection in Social Media](https://md.research.elamur.ai/free/en/papers/shah-2026-multi-view-framework-cross-domain/)**Vishwaa Shah, Indika Kahanda, Andrea Arikawa et al.*our summary*
7. **[AAbAAC: An Annotated Corpus for Autoimmunity Information Extraction](https://md.research.elamur.ai/free/en/papers/maury-2026-aabaac-annotated-corpus-autoimmunity-information/)**Fabien Maury, Solène Grosdidier, Maud de Dieuleveult et al.*our summary*
8. **[Agentic AI Architectures for SOAP Note Generation ↗](https://aclanthology.org/2026.bionlp-1.61/)**Keno Hanken
9. **[Agentic Feature Selection via LLM for Epileptic Seizure Detection ↗](https://aclanthology.org/2026.bionlp-1.6/)**Aizierjiang Aiersilan, Xiaodong Qu
10. **[AlienAnnotators at PsyDefDetect: What Lies Between the Lines: Probing Lightweight Open-Source LLMs for Psychological Defense Mechanism Detection ↗](https://aclanthology.org/2026.bionlp-2.28/)**Siam Rahman Karip, Nahid Hossain
11. **[Analyzing Prompt Design Choices in Biomedical Information Extraction for Low-Resource Languages ↗](https://aclanthology.org/2026.bionlp-1.4/)**Ayesha Khatun, Kadir Bulut Ozler, Steven Bethard et al.
12. **[Beyond Knowledge Graphs: PubMedBERT Embeddings as a Competitive Standalone Modality for Drug Re-purposing ↗](https://aclanthology.org/2026.bionlp-1.13/)**Rishik Kondadadi, John E. Ortega
13. **[BioConflict: A Benchmark for Evaluating Large Language Models in Biomedical Contradiction Detection and Consensus Synthesis ↗](https://aclanthology.org/2026.bionlp-1.44/)**Ashwin Kirubakaran, Henry Gagnier
14. **[BioCoref: Benchmarking Biomedical Coreference Resolution with LLMs ↗](https://aclanthology.org/2026.bionlp-1.42/)**Nourah Salem, Elizabeth White, Michael Bada et al.
15. **[BioRAG: A Systematic Ablation Study of Retrieval Strategies for Biomedical Question Answering ↗](https://aclanthology.org/2026.bionlp-1.10/)**Krushil Bhojani, Mayank Waghmare, Hima Bindu Nandyala
16. **[BioTopicXplor: A Web Tool for Interactive Exploration of PubMed Literature through Reproducible Topics. ↗](https://aclanthology.org/2026.bionlp-1.37/)**Lana Yeganova, Donald Comeau, Won Kim et al.
17. **[Bridging the Version Gap: Multi-version Training Improves ICD Code Prediction, Especially for Rare Codes ↗](https://aclanthology.org/2026.bionlp-1.29/)**Jinghui Liu, Anthony Nguyen
18. **[CAP: A Source-Grounded Proposition Scaffold for Faithful Clinical Dialogue-to-Note Generation ↗](https://aclanthology.org/2026.bionlp-1.46/)**Hyunkyung Lee, Jisoo Jung, Jeonguk Lee et al.
19. **[CASPAR: A Context-Aware Span Refinement Approach for Decision Support](https://md.research.elamur.ai/free/en/papers/tao-2026-caspar-context-aware-span-refinement/)**Jing Tao, Amir Eskandari, Farhana Zulkernine*our summary*
20. **[CENT: Context Engineering Framework for Normalization of Clinical Trial Procedures](https://md.research.elamur.ai/free/en/papers/taneja-2026-cent-context-engineering-framework-normalization/)**Sanya Taneja, Ziqing Ji, Hans Verstraete et al.*our summary*
21. **[CS_Metro at PsyDefDetect: Detecting Psychological Defense Mechanisms in Mental Health Dialogues with Summarization-Enhanced Transformer Ensembles](https://md.research.elamur.ai/free/en/papers/rebayet-2026-cs-metro-psydefdetect-detecting-psychological/)**Oarisa Rebayet, Radiul Walee, Symom Hossain Shohan et al.*our summary*
22. **[CUAMC @ MedExACT 2026: Robust Ensemble Voting for Fair Medical Decision Extraction ↗](https://aclanthology.org/2026.bionlp-2.24/)**William Baumgartner, Lisa Schilling
23. **[Can NLP Models Detect When One Publication Outweighs Twenty? Predicting Systematic Review Conclusion Changes ↗](https://aclanthology.org/2026.bionlp-1.68/)**Ebrahim Alharbi, Mark Stevenson
24. **[Citation-Aware Continual Pre-Training for Biomedical Language Models ↗](https://aclanthology.org/2026.bionlp-1.32/)**Masaki Asada, Tomoki Tsujimura, Tatsuya Ishigaki et al.
25. **[Clinical Evidence and Patient Reviews: A Linked Dataset for Antidepressant Side Effects ↗](https://aclanthology.org/2026.bionlp-1.52/)**Steven Au

[See all 124 papers in BioNLP 2026 — papers →](https://md.research.elamur.ai/free/en/venues/bionlp/2026/papers/)

## Works with our summary in our library (45)

The most cited first (OpenAlex citations plus our library's).

1. **[Overview of the PsyDefDetect Shared Task at BioNLP 2026: Detecting Levels of Psychological Defense Mechanisms in Supportive Conversations](https://md.research.elamur.ai/free/en/papers/na-2026-overview-psydefdetect-shared-task-bionlp/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Hongbin Na, Zimu Wang, Zhaoming Chen, et al.*2026 · 13 citations*
2. **[Diagnosable ColBERT: Debugging Late-Interaction Retrieval Models Using a Learned Latent Space as Reference](https://md.research.elamur.ai/free/en/papers/remy-2026-diagnosable-colbert-debugging-late-interaction/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**François Remy*2026 · 2 citations*
3. **[Nürnberg NLP at PsyDefDetect: Multi-Axis Voter Ensembles for Psychological Defence Mechanism Classification](https://md.research.elamur.ai/free/en/papers/steigerwald-2026-nurnberg-nlp-psydefdetect-multi-axis/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Philipp Steigerwald, Eric Rudolph, Jens Albrecht*2026 · 2 citations*
4. **[Otter at MedExAct2026: Diverse Encoder Ensemble for Medical Decision Span Detection](https://md.research.elamur.ai/free/en/papers/lowphansirikul-2026-otter-medexact2026-diverse-encoder-ensemble/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Lalita Lowphansirikul, Piyalitt Ittichaiwong*2026 · 1 citation*
5. **[When Retrieval Doesn't Help: A Large-Scale Study of Biomedical RAG](https://md.research.elamur.ai/free/en/papers/nourbakhsh-2026-when-retrieval-doesn-t-help/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Erfan Nourbakhsh, Rocky Slavin, Ke Yang, et al.*2026 · 1 citation*
6. **[TONI-NLP at PsyDefDetect: Defense Mechanism Detection via LLM-based Ensemble Methods](https://md.research.elamur.ai/free/en/papers/paul-2026-toni-nlp-psydefdetect-defense-mechanism/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Durjoy Paul, Arshitha Basavaraj, Callum Chan, et al.*2026 · 1 citation*
7. **[CS_Metro at PsyDefDetect: Detecting Psychological Defense Mechanisms in Mental Health Dialogues with Summarization-Enhanced Transformer Ensembles](https://md.research.elamur.ai/free/en/papers/rebayet-2026-cs-metro-psydefdetect-detecting-psychological/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Oarisa Rebayet, Radiul Walee, Symom Hossain Shohan, et al.*2026 · 1 citation*
8. **[transformer_1376 at PsyDefDetect: A QLoRA-Based Generative Framework for Context-Aware Psychological Defense Mechanism Detection](https://md.research.elamur.ai/free/en/papers/saha-2026-transformer-1376-psydefdetect-qlora-based/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Pritha Saha, Shuvodwip Saha, Anik Mahmud Shanto*2026 · 1 citation*
9. **[LAMAR-2 at MedGenVidQA 2026: Visual Answer Localization in Medical Videos via Multimodal LLM and Context-Augmented Prompting](https://md.research.elamur.ai/free/en/papers/sermsrisuwan-2026-lamar-2-medgenvidqa-2026-visual/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Watcharitpol Sermsrisuwan, Nopporn Lekuthai, Seksan Yoadsanit, et al.*2026 · 1 citation*
10. **[CASPAR: A Context-Aware Span Refinement Approach for Decision Support](https://md.research.elamur.ai/free/en/papers/tao-2026-caspar-context-aware-span-refinement/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Jing Tao, Amir Eskandari, Farhana Zulkernine*2026 · 1 citation*
11. **[Operation-Mechanism Alignment for Reliable Clinical Reasoning over Electronic Health Records](https://md.research.elamur.ai/free/en/papers/tao-2026-operation-mechanism-alignment-reliable-clinical/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Guanyu Tao, Siyao Wang, Yong Xue, et al.*2026 · 1 citation*
12. **[Seahawk at MedGenVidQA 2026: LLM Segment-Range Selection for Medical Visual Answer Localization](https://md.research.elamur.ai/free/en/papers/tian-2026-seahawk-medgenvidqa-2026-llm-segment/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Xiaotian Tian, Gulustan Dogan*2026 · 1 citation*
13. **[DAL Team at PsyDefDetect: From Supervised Encoders to Hierarchical LLM-RAG for Psychological Defense Detection](https://md.research.elamur.ai/free/en/papers/tran-2026-dal-team-psydefdetect-supervised-encoders/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Duc-Luong Tran, Phuong-Anh Chu, Hoang-Dat Do, et al.*2026 · 1 citation*
14. **[VISHC at PsyDefDetect: Mitigating Data Scarcity in Psychological Defense Classification with Context-Aware Synthetic Augmentation](https://md.research.elamur.ai/free/en/papers/vu-2026-vishc-psydefdetect-mitigating-data-scarcity/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Hoang-Thuy-Duong Vu, Quoc-Cuong Pham, Huy-Hieu Pham*2026 · 1 citation*
15. [**Trustworthy NLP for Low-Resource Languages: Agent-Based Uncertainty Modeling for Hebrew Radiology Report Structuring**Hadas Ben Atya, Naama Gavrielov, Zvi Badash, et al.*2026*](https://md.research.elamur.ai/free/en/papers/atya-2026-trustworthy-nlp-low-resource-languages/)
16. **[KGRxn-LLM: Knowledge Graph Enhanced Large Language Models for Molecular Reaction Reasoning](https://md.research.elamur.ai/free/en/papers/liu-2026-kgrxn-llm-knowledge-graph-enhanced/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Weichen Liu, Qiyao Xue, Yuyang Wu, et al.*2026*
17. **[Systematic Evaluation of the Quality of Synthetic Clinical Notes Rephrased by LLMs at Million-Note Scale](https://md.research.elamur.ai/free/en/papers/liu-2026-systematic-evaluation-quality-synthetic-clinical/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Jinghui Liu, Sarvesh Soni, Anthony Nguyen*2026*
18. **[Effects of Adaptive Pretraining in Specialized Domains for Named Entity Recognition](https://md.research.elamur.ai/free/en/papers/lynam-2026-effects-adaptive-pretraining-specialized-domains/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Jack Lynam, Sam Henry*2026*
19. **[VERICITE: Evaluating Sentence-Level Citation Faithfulness in Retrieval-Augmented Medical Question Answering](https://md.research.elamur.ai/free/en/papers/ma-2026-vericite-evaluating-sentence-level-citation/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Yixian Ma, Bohao Chu, Norbert Fuhr*2026*
20. **[From Rules to Predictions: Federated Tabular Learning with LLM Reasoning](https://md.research.elamur.ai/free/en/papers/mahanipour-2026-rules-predictions-federated-tabular-learning/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Afsaneh Mahanipour, Hana Khamfroush*2026*
21. **[AAbAAC: An Annotated Corpus for Autoimmunity Information Extraction](https://md.research.elamur.ai/free/en/papers/maury-2026-aabaac-annotated-corpus-autoimmunity-information/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Fabien Maury, Solène Grosdidier, Maud de Dieuleveult, et al.*2026*
22. **[NM at CRF Filling 2026: A Two-Stage LLM Pipeline for Clinical CRF Population](https://md.research.elamur.ai/free/en/papers/morabito-2026-nm-crf-filling-2026-two/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Niccolò Morabito*2026*
23. **[FACT: Functional Group Alignment and Consistency in Token Space for Structure-aware Molecular Representation Learning](https://md.research.elamur.ai/free/en/papers/nam-2026-fact-functional-group-alignment-consistency/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Hyeonyeong Nam, Woojae Choi, Deok-Joong Lee, et al.*2026*
24. **[FHexchange: Resources for Family Health History Extraction and Normalization From Consumer Dialog Sources](https://md.research.elamur.ai/free/en/papers/nguyen-2026-fhexchange-resources-family-health-history/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Michelle Nguyen, Nidhi Soley, Ayah Zirikly, et al.*2026*
25. **[IndicMedDialog: A Parallel Multi-Turn Medical Dialogue Dataset for Accessible Healthcare in Indic Languages](https://md.research.elamur.ai/free/en/papers/nigam-2026-indicmeddialog-parallel-multi-turn-medical/) [BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)**Shubham Kumar Nigam, Suparnojit Sarkar, Piyush Patel*2026*

[See all 45 works in BioNLP 2026 — papers →](https://md.research.elamur.ai/free/en/venues/bionlp/2026/works/)

## Top topics

Topics of its works in our library, with the number of works on each.

[Language models & pretraining (8)](https://md.research.elamur.ai/free/en/topics/language-models/) · [Evaluation & benchmarks (6)](https://md.research.elamur.ai/free/en/topics/evaluation-benchmarks/) · [Information retrieval & search (4)](https://md.research.elamur.ai/free/en/topics/information-retrieval/) · [Dialogue systems (3)](https://md.research.elamur.ai/free/en/topics/dialogue-systems/) · [Reasoning (3)](https://md.research.elamur.ai/free/en/topics/reasoning/) · [Vision & language (3)](https://md.research.elamur.ai/free/en/topics/multimodal/) · [Named entity recognition (2)](https://md.research.elamur.ai/free/en/topics/named-entity-recognition/) · [Question answering (2)](https://md.research.elamur.ai/free/en/topics/question-answering/) · [Information extraction (2)](https://md.research.elamur.ai/free/en/topics/information-extraction/) · [Summarization (2)](https://md.research.elamur.ai/free/en/topics/summarization/) · [Multilingual & cross-lingual NLP (1)](https://md.research.elamur.ai/free/en/topics/multilingual-nlp/) · [Low-resource languages (1)](https://md.research.elamur.ai/free/en/topics/low-resource-languages/) · [Knowledge graphs & ontologies (1)](https://md.research.elamur.ai/free/en/topics/knowledge-graphs/) · [Hebrew & Aramaic (1)](https://md.research.elamur.ai/free/en/topics/hebrew-aramaic/) · [Semitic languages (1)](https://md.research.elamur.ai/free/en/topics/semitic-languages/)

**2 more topics**

[Interpretability (1)](https://md.research.elamur.ai/free/en/topics/interpretability/) · [Modern Hebrew (1)](https://md.research.elamur.ai/free/en/topics/modern-hebrew/)

## Fields

[Computer Science (45)](https://md.research.elamur.ai/free/en/shelves/computer-science/) · [Arts and Humanities (26)](https://md.research.elamur.ai/free/en/shelves/arts-and-humanities/) · [Biochemistry, Genetics and Molecular Biology (15)](https://md.research.elamur.ai/free/en/shelves/biochemistry-genetics-and-molecular-biology/) · [Medicine (8)](https://md.research.elamur.ai/free/en/shelves/medicine/) · [Psychology (8)](https://md.research.elamur.ai/free/en/shelves/psychology/) · [Health Professions (8)](https://md.research.elamur.ai/free/en/shelves/health-professions/) · [Materials Science (2)](https://md.research.elamur.ai/free/en/shelves/materials-science/) · [Social Sciences (2)](https://md.research.elamur.ai/free/en/shelves/social-sciences/) · [Chemistry (1)](https://md.research.elamur.ai/free/en/shelves/chemistry/) · [Decision Sciences (1)](https://md.research.elamur.ai/free/en/shelves/decision-sciences/) · [Engineering (1)](https://md.research.elamur.ai/free/en/shelves/engineering/)

## Top authors

Authors with a page who published here most often: their works here, and the citations of those works.

[🧑‍🔬**Adam Sutton**2 works here](https://md.research.elamur.ai/free/en/authors/adam-sutton/) · [🧑‍🔬**Bohao Chu**2 works here](https://md.research.elamur.ai/free/en/authors/bohao-chu/) · [🧑‍🔬**Norbert Fuhr**2 works here](https://md.research.elamur.ai/free/en/authors/norbert-fuhr/) · [🧑‍🔬**Richard Dobson**2 works here](https://md.research.elamur.ai/free/en/authors/richard-dobson/) · [🧑‍🔬**Sarvesh Soni**2 works here](https://md.research.elamur.ai/free/en/authors/sarvesh-soni/) · [🧑‍🔬**Thomas Searle**2 works here](https://md.research.elamur.ai/free/en/authors/thomas-searle/) · [🧑‍🔬**Hongbin Na**1 work here · 13 citations](https://md.research.elamur.ai/free/en/authors/hongbin-na/) · [🧑‍🔬**John Torous**1 work here · 13 citations](https://md.research.elamur.ai/free/en/authors/john-torous/) · [🧑‍🔬**Kailai Yang**1 work here · 13 citations](https://md.research.elamur.ai/free/en/authors/kailai-yang/) · [🧑‍🔬**Ling Chen**1 work here · 13 citations](https://md.research.elamur.ai/free/en/authors/ling-chen/) · [🧑‍🔬**Rena Gao**1 work here · 13 citations](https://md.research.elamur.ai/free/en/authors/rena-gao/) · [🧑‍🔬**Shaoxiong Ji**1 work here · 13 citations](https://md.research.elamur.ai/free/en/authors/shaoxiong-ji/)

## Top institutions

Institutions on the bylines of its works here, by the number of works.

[🏛️**National Institutes of Health** Bethesda · United States 3 works here](https://md.research.elamur.ai/free/en/government/national-institutes-of-health/) · [🎓**Chittagong University of Engineering & Technology** Chittagong · Bangladesh 2 works here](https://md.research.elamur.ai/free/en/universities/chittagong-university-of-engineering-technology/) · [🎓**King's College London** London · United Kingdom 2 works here](https://md.research.elamur.ai/free/en/universities/king-s-college-london/) · [🎓**Mahidol University** Bangkok · Thailand 2 works here](https://md.research.elamur.ai/free/en/universities/mahidol-university/) · [🔬**United States National Library of Medicine** Bethesda · United States 2 works here](https://md.research.elamur.ai/free/en/labs/united-states-national-library-of-medicine/) · [🎓**University of Duisburg-Essen** Essen · Germany 2 works here](https://md.research.elamur.ai/free/en/universities/university-of-duisburg-essen/) · [🎓**Hiroshima University** Hiroshima · Japan 1 work here](https://md.research.elamur.ai/free/en/universities/hiroshima-university/) · [🎓**University of Technology Sydney** Sydney · Australia 1 work here](https://md.research.elamur.ai/free/en/universities/university-of-technology-sydney/) · [🎓**University of North Carolina at Chapel Hill** Chapel Hill · United States 1 work here](https://md.research.elamur.ai/free/en/universities/university-of-north-carolina-at-chapel-hill/) · [🎓**University of North Florida** Jacksonville · United States 1 work here](https://md.research.elamur.ai/free/en/universities/university-of-north-florida/) · [🏛️**Commonwealth Scientific and Industrial Research Organisation** Canberra · Australia 1 work here](https://md.research.elamur.ai/free/en/government/commonwealth-scientific-and-industrial-research-organisation/) · [🔬**Centre National de la Recherche Scientifique** Paris · France 1 work here](https://md.research.elamur.ai/free/en/labs/centre-national-de-la-recherche-scientifique/)

works and citations from OpenAlex and our library.

- [← previous BioNLP 2011](https://md.research.elamur.ai/free/en/venues/bionlp/2011/)
- [↑ back to BioNLP](https://md.research.elamur.ai/free/en/venues/bionlp/)